Making PySpark Code Faster with DuckDB

Challenges of squeezing Spark to minimum setup

Apache Spark has been designed to work on a cluster, and when dealing with small to medium data, having a network overhead makes no sense given the power of the current machines.

There are two reasons why you want sometimes a lightweight setup, meaning a single node Apache Spark with small resource requirements :

• Small pipelines (typically daily/hourly workload)
• Local development setup (unit/integration and end to end tests)

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FROM python:3.11-slim
RUN pip install duckdb

The flexibility of switching the execution engine

Today, many people adopt the strategy of putting their data on an object storage, typically a data lake / lakehouse and levaraging open format like Parquet or table format like Delta Lake, Hudi or Iceberg.

For pure SQL users, switching to different compute engine (assuming the SQL dialect is compatible) starts to be a reality through the usage of dbt and their different adapters. You can send the same SQL code against different compute engine.

So, why wouldn't it be possible for Apache Spark to use a different execution engine with the same code?

Enter PySpark powered by DuckDB.

A first entry point to DuckDB for PySpark users

The DuckDB team has released as part of v.0.9 an experimental PySpark API compatibility. While this one is still limited, let’s get a glimpse on its promises. You can find the complete code used below on this repository. Let's start with a git clone.

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git clone https://github.com/mehd-io/duckdb-pyspark-demo

First, we need some data and we’ll be using the open dataset from Hacker News that MotherDuck is hosting.

We’ll be downloading the Parquet dataset that sits on S3 locally with the following command. Size is about 1GB :

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make data

You now should have the data located in ./data folder.

Our PySpark script contains a conditional import that look for an environment variable to be able to switch engine.

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import os

# Read the environment variable
use_duckdb = os.getenv("USE_DUCKDB", "false").lower() == "true"

if use_duckdb:
    from duckdb.experimental.spark.sql.functions import avg, col, count
    from duckdb.experimental.spark.sql import SparkSession
else:
    from pyspark.sql.functions import avg, col, count
    from pyspark.sql import SparkSession

The rest of the script remains the same! In this pipeline, we are looking if posting more on Hacker News gets you more score on average. Here's a snippet of the main transformation :

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# Does users who post more stories tend to have higher or lower average scores ?
result = (
    df.filter((col("type") == "story") & (col("by") != "NULL"))
    .groupBy(col("by"))
    .agg(
        avg(col("score")).alias("average_score"),
        count(col("id")).alias("number_of_stories"),
    )
    .filter(col("number_of_stories") > 1)  # Filter users with more than one story
    .orderBy(
        col("number_of_stories").desc(), col("average_score").desc()
    )  # Order by the number of stories first, then by average score
    .limit(10)
)

We then run the Pyspark job using DuckDB with :

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make duckspark

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real    0m1.225s
user    0m1.970s
sys     0m0.160s

And same code using pure Pyspark :

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make pyspark

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real    0m5.411s
user    0m12.700s
sys     0m1.221s

And the data result :

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┌──────────────┬────────────────────┬───────────────────┐
│      by      │   average_score    │ number_of_stories │
│   varchar    │       double       │       int64       │
├──────────────┼────────────────────┼───────────────────┤
│ Tomte        │  11.58775956284153 │              4575 │
│ mooreds      │  9.933416303671438 │              3214 │
│ rntn         │   8.75172943889316 │              2602 │
│ tosh         │ 20.835010060362173 │              2485 │
│ rbanffy      │ 7.7900505902192245 │              2372 │
│ todsacerdoti │  32.99783456041576 │              2309 │
│ pseudolus    │ 20.024185587364265 │              2026 │
│ gmays        │ 12.595103578154426 │              1593 │
│ PaulHoule    │  8.440198159943384 │              1413 │
│ bookofjoe    │ 13.232626188734455 │              1367 │
├──────────────┴────────────────────┴───────────────────┤
│ 10 rows                                     3 columns │

As you can see, there's no need to worry about under-posting on Hacker News, as the algorithm doesn't necessarily favor those who post more. 😄

When it comes to performance, it's evident that using DuckDB significantly speeds up the pipeline. While this blog post isn't a comprehensive benchmark for local processing, for a more realistic comparison, check out Niels Claes’s blog on using DuckDB instead of Spark in dbt pipelines. He did an excellent job using the TPC-DS benchmark, a standard in the industry for comparing database performance.

Limitations & Use Cases

Currently, the API supports reading from csv, parquet, and json formats. So it’s not quite ready for real pipeline usage as writing functions are necessary. Plus, the number of available functions is limited, as you can see here.

However, you could start using it for unit testing. Unit testing functions in Spark often involve reading data and checking a transformation function in memory, with no writing needed. You could use similar logic to switch between DuckDB and Spark for some tests to speed things up ⚡.

Want to Contribute?

Integrating Spark with DuckDB can accelerate the development process and, in the future, help simplify pipelines, reducing the overhead and costs associated with minimum Spark clusters.

We’ve seen how bypassing the JVM can make pipelines with small data faster and more cost-efficient, especially around development, CI, and execution.

This API marks a significant milestone as the first Python code integrated into DuckDB, predominantly built from C++. Its Python-centric nature offers a unique opportunity for Python enthusiasts to contribute with ease. Dive into the existing code base and explore the open issues. Your input and contributions can make a substantial difference!

Finally, it looks like Spark can quack after all. 🦆